Platforms
- Microarrays are an oligonucleotide probe based technology designed to query genes, SNPs and CNVs in samples, amongst other things. Probes bound to a surface hybridize to their intended targets to confirm or refute the existance of the modality of interest. The typical experiment creates a spotted image which is then processed to create a summary of targets and their intended scores or presence/absence call
- We rely on internally developed workflows to analyze vast amounts of microarray data. We perform image processing algorithms and statistical analysis on resulting data to uncover biomarkers and signatures that are relevant for driving sample states. Some of our processes include normalization, transformation, clustering and enrichment analysis
- With the advent of genome sequencing technologies that produce vast amounts of data, the problem of data management as well as analysis now requires special tools and processes. Innovagene is a leader in this space and has helped several customers analyze exome-seq, rna-seq, chip-seq and whole-genome-seq data. We use both open source and commercial tools to solve challenges in the NGS space.
- Metabolomics is a high throughput technology that uses High Pressure Liquid Chromatography (HPLC) to measure the abundance of metabolites in a sample of interest, and then study chemical processes that metabolites affect. The goal is to understand the role of these metabolies, identify patterns or signatures for diagnostics use.
- We rely on internally developed workflows to analyze vast amounts of metabolomics data. We perform statistical analysis on resulting data to uncover biomarkers and signatures that are relevant for driving sample states. Some of our processes include normalization, transformation, clustering and enrichment analysis.
- Proteomics is a high throughput technology that uses Mass Spectrometry to measure the abundance of proteins in a sample of interest, and then study biochemical processes that proteins affect. The goal is to understand the role of these proteins or their chemical modifications (such as phosphorylation, ubiquination, methylation, etc) to identify patterns or signatures for diagnostics use.
- Check out products we've developed for our customer at Harvard, NakedQuant and Protein Modification Quantifier.
Computer-task
- Automation
- High Performance Computing
- Application development - We can develop standalone graphical user interface (GUI) applications that leverage scientific libraries in Perl, Python, Matlab and R - enabling fast application development with Matlab. The advantages are visible when a quick prototype solution is desired or a proof-of-concept feasibility is undertaken. They are - low cost, short coding cycle, quick delivery. For enterprise applications written in Java, C#, etc - check out our Outsourcing section.
- Statistical data mining
- Text mining
- Image processing
- High Performance Computing
- Application development - Innovagene can develop standalone graphical user interface (GUI) applications that leverage scientific libraries in Perl, Python, Matlab and R - enabling fast application development with Matlab. The advantages are visible when a quick prototype solution is desired or a proof-of-concept feasibility is undertaken. They are - low cost, short coding cycle, quick delivery. For enterprise applications written in Java, C#, etc - check out our Outsourcing section.
- Statistical data mining
- Text mining
- Image processing
Bioinformatics-Task
- Population Genetics
- Structural Biology
- Application development - We can develop standalone graphical user interface (GUI) applications that leverage scientific libraries in Perl, Python, Matlab and R - enabling fast application development with Matlab. The advantages are visible when a quick prototype solution is desired or a proof-of-concept feasibility is undertaken. They are - low cost, short coding cycle, quick delivery. For enterprise applications written in Java, C#, etc - check out our Outsourcing section.
- DNA based Forensics
- Drug repurposing
- Molecular diagnostics (MDx), Companion diagnostics (CDx), Biomarker Discovery, Target identification, Target validation, Identification, Responder, Patient Stratification, Personalized Medicine
Omics
OMICS refers to Genomics, Proteomics and Metabolomics, which are a set of high throughput technologies that generate vast amounts of information about the state of molecular entitities inside biological samples. Genomics